Structure of the Prx6-subfamily 1-Cys peroxiredoxin from Sulfolobus islandicus

Acta Crystallogr F Struct Biol Commun. 2019 Jun 1;75(Pt 6):428-434. doi: 10.1107/S2053230X19006472. Epub 2019 May 13.

Abstract

Aerobic thermoacidophilic archaea belonging to the genus Sulfolobus harbor peroxiredoxins, thiol-dependent peroxidases that assist in protecting the cells from oxidative damage. Here, the crystal structure of the 1-Cys peroxiredoxin from Sulfolobus islandicus, named 1-Cys SiPrx, is presented. A 2.75 Å resolution data set was collected from a crystal belonging to space group P212121, with unit-cell parameters a = 86.8, b = 159.1, c = 189.3 Å, α = β = γ = 90°. The structure was solved by molecular replacement using the homologous Aeropyrum pernix peroxiredoxin (ApPrx) structure as a search model. In the crystal structure, 1-Cys SiPrx assembles into a ring-shaped decamer composed of five homodimers. This quaternary structure corresponds to the oligomeric state of the protein in solution, as observed by size-exclusion chromatography. 1-Cys SiPrx harbors only a single cysteine, which is the peroxidatic cysteine, and lacks both of the cysteines that are highly conserved in the C-terminal arm domain in other archaeal Prx6-subfamily proteins such as ApPrx and that are involved in the association of dimers into higher-molecular-weight decamers and dodecamers. It is thus concluded that the Sulfolobus Prx6-subfamily protein undergoes decamerization independently of arm-domain cysteines.

Keywords: Prx6; Sulfolobus islandicus; archaea; chaperones; peroxiredoxins.

MeSH terms

  • Amino Acid Sequence
  • Crystallography, X-Ray
  • Cysteine / chemistry
  • Cysteine / metabolism*
  • Models, Molecular
  • Peroxiredoxins / chemistry*
  • Peroxiredoxins / metabolism*
  • Protein Conformation
  • Protein Multimerization
  • Sequence Homology
  • Sulfolobus / metabolism*

Substances

  • Peroxiredoxins
  • Cysteine