Structural and biochemical analysis of a phosin from Streptomyces chartreusis reveals a combined polyphosphate- and metal-binding fold

FEBS Lett. 2019 Aug;593(15):2019-2029. doi: 10.1002/1873-3468.13476. Epub 2019 Jun 17.

Abstract

X-ray crystallographic analysis of a phosin (PptA) from Steptomyces chartreusis reveals a metal-associated, lozenge-shaped fold featuring a 5-10 Å wide, positively charged tunnel that traverses the protein core. Two distinct metal-binding sites were identified in which the predominant metal ion was Cu2+ . In solution, PptA forms stable homodimers that bind with nanomolar affinity to polyphosphate, a stress-related biopolymer acting as a phosphate and energy reserve in conditions of nutrient depletion. A single protein dimer interacts with 14-15 consecutive phosphate moieties within the polymer. Our observations suggest that PptA plays a role in polyphosphate metabolism, mobilisation or sensing, possibly by acting in concert with polyphosphate kinase (Ppk). Like Ppk, phosins may influence antibiotic synthesis by streptomycetes.

Keywords: antibiotics; conserved histidine α-helical domain; nutritional stress; phosphate metabolism; secondary metabolism; signalling.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Crystallography, X-Ray
  • Dimerization
  • Iron / metabolism
  • Iron-Binding Proteins / chemistry*
  • Iron-Binding Proteins / metabolism*
  • Models, Molecular
  • Phosphotransferases (Phosphate Group Acceptor) / metabolism
  • Polyphosphates / metabolism*
  • Protein Conformation
  • Protein Folding
  • Protein Multimerization
  • Scattering, Small Angle
  • Streptomyces / metabolism*

Substances

  • Bacterial Proteins
  • Iron-Binding Proteins
  • Polyphosphates
  • Iron
  • Phosphotransferases (Phosphate Group Acceptor)
  • polyphosphate kinase

Supplementary concepts

  • Streptomyces chartreusis