Natural variations of growth thermo-responsiveness determined by SAUR26/27/28 proteins in Arabidopsis thaliana

New Phytol. 2019 Oct;224(1):291-305. doi: 10.1111/nph.15956. Epub 2019 Jun 26.

Abstract

How diversity in growth thermo-responsiveness is generated for local adaptation is a long-standing biological question. We investigated molecular genetic basis of natural variations in thermo-responsiveness of plant architecture in Arabidopsis thaliana. We measured the extent of rosette architecture at 22°C and 28°C in a set of 69 natural accessions and determined their thermo-responsiveness of plant architecture. A genome-wide association study was performed to identify major loci for variations in thermo-responsiveness. The SAUR26 subfamily, a new subfamily of SAUR genes, was identified as a major locus for the thermo-responsive architecture variations. The expression of SAUR26/27/28 is modulated by temperature and PIF4. Extensive natural polymorphisms in these genes affect their RNA expression levels and protein activities and influence the thermo-responsiveness of plant architecture. In addition, the SAUR26 subfamily genes exhibit a high variation frequency and their variations are associated with the local temperature climate. This study reveals that the SAUR26 subfamily is a key variation for thermo-responsive architecture and suggests a preference for generating diversity for local adaptation through signaling connectors.

Keywords: SAUR; Arabidopsis thaliana; high temperature; natural variation; thermo-morphogenesis.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Arabidopsis / genetics
  • Arabidopsis / growth & development*
  • Arabidopsis / metabolism*
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism*
  • Cell Membrane / metabolism
  • Ecotype
  • Gene Expression Regulation, Plant
  • Genes, Plant
  • Genetic Variation*
  • Genome-Wide Association Study
  • Intracellular Signaling Peptides and Proteins / genetics
  • Intracellular Signaling Peptides and Proteins / metabolism*
  • Multigene Family
  • Mutation / genetics
  • Phenotype
  • Polymorphism, Genetic
  • Protein Binding
  • Proton-Translocating ATPases / metabolism
  • Quantitative Trait Loci / genetics
  • Temperature*

Substances

  • Arabidopsis Proteins
  • At3g03230 protein, Arabidopsis
  • At3g03830 protein, Arabidopsis
  • At3g03850 protein, Arabidopsis
  • Intracellular Signaling Peptides and Proteins
  • Proton-Translocating ATPases