Deep learning for automatic Gleason pattern classification for grade group determination of prostate biopsies

Virchows Arch. 2019 Jul;475(1):77-83. doi: 10.1007/s00428-019-02577-x. Epub 2019 May 16.

Abstract

Histopathologic grading of prostate cancer using Gleason patterns (GPs) is subject to a large inter-observer variability, which may result in suboptimal treatment of patients. With the introduction of digitization and whole-slide images of prostate biopsies, computer-aided grading becomes feasible. Computer-aided grading has the potential to improve histopathological grading and treatment selection for prostate cancer. Automated detection of GPs and determination of the grade groups (GG) using a convolutional neural network. In total, 96 prostate biopsies from 38 patients are annotated on pixel-level. Automated detection of GP 3 and GP ≥ 4 in digitized prostate biopsies is performed by re-training the Inception-v3 convolutional neural network (CNN). The outcome of the CNN is subsequently converted into probability maps of GP ≥ 3 and GP ≥ 4, and the GG of the whole biopsy is obtained according to these probability maps. Differentiation between non-atypical and malignant (GP ≥ 3) areas resulted in an accuracy of 92% with a sensitivity and specificity of 90 and 93%, respectively. The differentiation between GP ≥ 4 and GP ≤ 3 was accurate for 90%, with a sensitivity and specificity of 77 and 94%, respectively. Concordance of our automated GG determination method with a genitourinary pathologist was obtained in 65% (κ = 0.70), indicating substantial agreement. A CNN allows for accurate differentiation between non-atypical and malignant areas as defined by GPs, leading to a substantial agreement with the pathologist in defining the GG.

Keywords: Convolutional neural network; Gleason patterns; Grade groups; Prostate.

MeSH terms

  • Automation, Laboratory
  • Biopsy
  • Deep Learning*
  • Humans
  • Image Interpretation, Computer-Assisted / methods*
  • Male
  • Neoplasm Grading / methods*
  • Observer Variation
  • Pattern Recognition, Automated / methods*
  • Predictive Value of Tests
  • Prostatic Neoplasms / classification
  • Prostatic Neoplasms / pathology*
  • Reproducibility of Results

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