Identification of potential biomarkers for diagnosis of pancreatic and biliary tract cancers by sequencing of serum microRNAs

BMC Med Genomics. 2019 May 16;12(1):62. doi: 10.1186/s12920-019-0521-8.

Abstract

Background: Pancreatic and biliary tract cancer (PC and BTC, respectively) are difficult to diagnose because of their clinical characteristics; however, recent studies suggest that serum microRNAs (miRNAs) might be the key to developing more efficient diagnostic methods for these cancers.

Methods: We analysed the genome-wide expression of serum miRNAs in PC and BTC patients to identify novel biomarker candidates using high-throughput sequencing and experimentally validated miRNAs on clinical samples.

Results: Statistical and classification analysis of the serum miRNA-expression profiles of 55 patient samples showed distinguishable patterns between cancer patients and healthy controls; however, we were unable to distinguish the two cancers. We found that three of the highest performing miRNAs were capable of distinguishing cancer patients from controls, with an accuracy of 92.7%. Additionally, dysregulation of these three cancer-specific miRNAs was demonstrated in an independent sample group by quantitative reverse transcription polymerase chain reaction.

Conclusions: These results suggested three candidate serum miRNAs (mir-744-5p, mir-409-3p, and mir-128-3p) as potential biomarkers for PC and BTC diagnosis.

Keywords: Biliary tract cancer; Biomarker; Diagnosis; Pancreatic cancer; Serum miRNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biliary Tract Neoplasms / blood
  • Biliary Tract Neoplasms / diagnosis*
  • Biliary Tract Neoplasms / genetics*
  • Biomarkers, Tumor / blood
  • Biomarkers, Tumor / genetics*
  • Computational Biology
  • Humans
  • MicroRNAs / blood
  • MicroRNAs / genetics*
  • Pancreatic Neoplasms / blood
  • Pancreatic Neoplasms / diagnosis*
  • Pancreatic Neoplasms / genetics*
  • Sequence Analysis, RNA*

Substances

  • Biomarkers, Tumor
  • MicroRNAs