Biochemical and structural investigation of taurine:2-oxoglutarate aminotransferase from Bifidobacterium kashiwanohense

Biochem J. 2019 Jun 11;476(11):1605-1619. doi: 10.1042/BCJ20190206.

Abstract

Taurine aminotransferases catalyze the first step in taurine catabolism in many taurine-degrading bacteria and play an important role in bacterial taurine metabolism in the mammalian gut. Here, we report the biochemical and structural characterization of a new taurine:2-oxoglutarate aminotransferase from the human gut bacterium Bifidobacterium kashiwanohense (BkToa). Biochemical assays revealed high specificity of BkToa for 2-oxoglutarate as the amine acceptor. The crystal structure of BkToa in complex with pyridoxal 5'-phosphate (PLP) and glutamate was determined at 2.7 Å resolution. The enzyme forms a homodimer, with each monomer exhibiting a typical type I PLP-enzyme fold and conserved PLP-coordinating residues interacting with the PLP molecule. Two glutamate molecules are bound in sites near the predicted active site and they may occupy a path for substrate entry and product release. Molecular docking reveals a role for active site residues Trp21 and Arg156, conserved in Toa enzymes studied to date, in interacting with the sulfonate group of taurine. Bioinformatics analysis shows that the close homologs of BkToa are also present in other anaerobic gut bacteria.

Keywords: 2-oxoglutarate; aminotransferase; gut bacteria; isethionate; sulfoacetaldehyde; taurine.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Bifidobacterium / enzymology*
  • Bifidobacterium / genetics
  • Bifidobacterium / isolation & purification
  • Catalytic Domain / genetics
  • Conserved Sequence
  • Crystallography, X-Ray
  • Gastrointestinal Tract / microbiology
  • Humans
  • Kinetics
  • Models, Molecular
  • Molecular Docking Simulation
  • Mutagenesis, Site-Directed
  • Phylogeny
  • Pyridoxal Phosphate / metabolism
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Transaminases / chemistry*
  • Transaminases / genetics
  • Transaminases / metabolism

Substances

  • Bacterial Proteins
  • Recombinant Proteins
  • Pyridoxal Phosphate
  • Transaminases
  • taurine aminotransferase