Whole-Genome Sequencing and Genomic Analysis of a Virulent Bacteriophage Infecting Bacillus cereus

Intervirology. 2018;61(6):272-280. doi: 10.1159/000499068. Epub 2019 May 9.

Abstract

Objective: Infants with a weak immune system are prone to infection with Bacillus cereus, which is commonly found in natural environments. With the aim of achieving better control of this pathogenic bacterium, in the present study we characterized a new bacteriophage, ΦBC01.

Methods: Bacteriophage particles were analyzed by transmission electron microscopy. Factors influencing adsorption were identified in a double-layer plaque assay. Sodium dodecyl sulfate polyacrylamide gel electrophoresis was conducted to determine the size of major structural proteins. The complete genome of the phage was analyzed.

Results: Bacteriophage particles (105.3 ± 3.1 nm icosahedral head and 208.8 ± 3.6 nm contractile tail) were identified as Myoviridae. ΦBC01 was found to have host specificity to B. cereus. Major structural proteins of ΦBC01 showed 2 well-pronounced bands of 99 and 56 kDa. The 158,385-bp genome sequence of ΦBC01 was determined: 56 of the 239 open reading frames were annotated, indicating involvement in bacteriophage DNA manipulation, cell lysis, packaging, virion structure, and other functions.

Conclusion: Because of characterization and genotyping of a new bacteriophage from soil samples containing earthworms, this study provides a baseline for the development of alternatives to antibiotics.

Keywords: Annotation; Bacillus cereus; Bacteriophage; Biocontrol; Whole genome.

MeSH terms

  • Bacillus Phages / genetics*
  • Bacillus Phages / ultrastructure
  • Bacillus cereus / virology*
  • Genome, Viral*
  • Genomics* / methods
  • Host Specificity
  • Phylogeny
  • Soil Microbiology
  • Whole Genome Sequencing*