Highly selective enrichment of phosphopeptides using poly(dibenzo-18-crown-6) as a solid-phase extraction material

Biomed Chromatogr. 2019 Sep;33(9):e4567. doi: 10.1002/bmc.4567. Epub 2019 Jun 4.

Abstract

A poly(dibenzo-18-crown-6) was used as a new solid-phase extraction material for the selective enrichment of phosphopeptides. Isolation of phosphopeptides was achieved based on specific ionic interactions between poly(dibenzo-18-crown-6) and the phosphate group of phosphopeptides. Thus, a method was developed and optimized, including loading, washing and elution steps, for the selective enrichment of phosphopeptides. To assess this potential, tryptic digest of three proteins (α- casein, β-casein and ovalbumin) was applied on poly(dibenzo-18-crown-6). The nonspecific products were removed by centrifugation and washing. The spectrometric analysis was performed using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Highly selective enrichment of both mono- and multiphosphorylated peptides was achieved using poly(dibenzo-18-crown-6) as solid-phase extraction material with minimum interference from nonspecific compounds. Furthermore, evaluation of the efficiency of the poly(dibenzo-18-crown-6) was performed by applying the digest of egg white. Finally, quantum mechanical calculations were performed to calculate the binding energies to predict the affinity between poly(dibenzo-18-crown-6) and various ligands. The newly identified solid-phase extraction material was found to be a highly efficient tool for phosphopeptide recovery from tryptic digest of proteins.

Keywords: enrichment; phosphopeptides; phosphoproteomics; poly(dibenzo-18-crown-6); solid-phase extraction material.

MeSH terms

  • Crown Ethers / chemistry*
  • Models, Molecular
  • Peptide Fragments / analysis
  • Peptide Fragments / chemistry
  • Phosphopeptides / analysis
  • Phosphopeptides / chemistry
  • Phosphopeptides / isolation & purification*
  • Polymers / chemistry
  • Proteomics
  • Solid Phase Extraction / instrumentation
  • Solid Phase Extraction / methods*

Substances

  • Crown Ethers
  • Peptide Fragments
  • Phosphopeptides
  • Polymers
  • dibenzo-18-crown-6