Identification of transcription factors of nitrate reductase gene promoters and NRE2 cis-element through yeast one-hybrid screening in Nicotiana tabacum

BMC Plant Biol. 2019 Apr 16;19(1):145. doi: 10.1186/s12870-019-1724-z.

Abstract

Background: This study aimed to identify the transcription factors of nitrate reductase genes (NIA1 and NIA2) promoters and hypothetical cis-element of NRE2. Based on the constructed cDNA library of Nicotiana tabacum K326, a yeast one-hybrid system was established using the Matchmaker® Gold Yeast One-Hybrid Library Screening System from Clontech. The transcription factors of NIA1 andNIA2 promoters and NRE2 cis-elements were screened.

Results: After sequencing and bioinformatics analysis, 15 cDNA sequences were identified: 9 for NIA1 (including XP_016503563.1 and NP_001312236.1), 3 for NIA2 (including XP_016510250.1), and 3 for NRE2 (including XM_016576899.1). XP_016503563.1 was annotated in PREDICTED: CRM-domain containing factor CFM3, and NP_001312236.1chloroplastic/mitochondrial-like in Nicotiana tabacum. NP_001312236.1 was annotated in Sulfite oxidase-like of Nicotiana tabacum. XP_016510250.1 was annotated as PREDICTED: uncharacterized protein LOC107827596 in Nicotiana tabacum. XM_016576899.1 was annotated in PREDICTED: Nicotiana tabacum RING-H2 finger protein ATL16-like (LOC107759033).

Conclusion: A yeast one-hybrid library was successfully constructed. The identified transcription factors may provide a theoretical basis for the study of plant nitrate reductase.

Keywords: Nitrate reductase; Transcriptional factor; Yeast one-hybrid library; cis-element.

MeSH terms

  • Cloning, Molecular
  • Gene Library
  • Genes, Plant*
  • Glucuronidase / metabolism
  • Nicotiana / genetics*
  • Nitrate Reductase / genetics*
  • Nitrate Reductase / metabolism
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • Promoter Regions, Genetic*
  • Response Elements / genetics*
  • Transcription Factors / metabolism*
  • Two-Hybrid System Techniques*

Substances

  • Plant Proteins
  • Transcription Factors
  • Nitrate Reductase
  • Glucuronidase