Cadmium SAD phasing at CuKα wavelength

F1000Res. 2019 Jan 21:8:84. doi: 10.12688/f1000research.17694.1. eCollection 2019.

Abstract

Single-wavelength anomalous diffraction (SAD) is the most common method for de novo elucidation of macromolecular structures by X-ray crystallography. It requires an anomalous scatterer in a crystal to calculate phases. A recent study by Panneerselvam et al. emphasized the utility of cadmium ions for SAD phasing at the standard synchrotron wavelength of 1 Å. Here we show that cadmium is also useful for phasing of crystals collected in-house with CuKα radiation. Using a crystal of single-domain antibody as an experimental model, we demonstrate how cadmium SAD can be conveniently employed to solve a CuKα dataset. We then discuss the factors which make this method generally applicable.

Keywords: Cd-SAD; Protein crystallography; cadmium ions; experimental phasing; single-wavelength anomalous diffraction.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cadmium / chemistry*
  • Crystallography, X-Ray*
  • Models, Molecular*
  • Single-Domain Antibodies / chemistry

Substances

  • Single-Domain Antibodies
  • Cadmium

Grants and funding

This work is funded by the Ministry of Science and Higher Education of the Russian Federation (contract 14.577.21.0217, unique identifier RFMEFI57716X0217) and co-funded by CJSC Biocad.