Mapping Post-Translational Modifications of de Novo Purine Biosynthetic Enzymes: Implications for Pathway Regulation

J Proteome Res. 2019 May 3;18(5):2078-2087. doi: 10.1021/acs.jproteome.8b00969. Epub 2019 Apr 18.

Abstract

Purines represent a class of essential metabolites produced by the cell to maintain cellular homeostasis and facilitate cell proliferation. In times of high purine demand, the de novo purine biosynthetic pathway is activated; however, the mechanisms that facilitate this process are largely unknown. One plausible mechanism is through intracellular signaling, which results in enzymes within the pathway becoming post-translationally modified to enhance their individual enzyme activities and the overall pathway metabolic flux. Here, we employ a proteomic strategy to investigate the extent to which de novo purine biosynthetic pathway enzymes are post-translationally modified in 293T cells. We identified 7 post-translational modifications on 135 residues across the 6 human pathway enzymes. We further asked whether there were differences in the post-translational modification state of each pathway enzyme isolated from cells cultured in the presence or absence of purines. Of the 174 assigned modifications, 67% of them were only detected in one experimental growth condition in which a significant number of serine and threonine phosphorylations were noted. A survey of the most-probable kinases responsible for these phosphorylation events uncovered a likely AKT phosphorylation site at residue Thr397 of PPAT, which was only detected in cells under purine-supplemented growth conditions. These data suggest that this modification might alter enzyme activity or modulate its interaction(s) with downstream pathway enzymes. Together, these findings propose a role for post-translational modifications in pathway regulation and activation to meet intracellular purine demand.

Keywords: AKT; PTM; de novo purine biosynthesis; metabolism; phosphorylation; post-translational modification.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • Adenylosuccinate Lyase / genetics
  • Adenylosuccinate Lyase / metabolism
  • Amidophosphoribosyltransferase / genetics
  • Amidophosphoribosyltransferase / metabolism*
  • Amino Acid Sequence
  • Carbon-Nitrogen Ligases / genetics
  • Carbon-Nitrogen Ligases / metabolism
  • Green Fluorescent Proteins / genetics
  • Green Fluorescent Proteins / metabolism
  • HEK293 Cells
  • Humans
  • Peptide Mapping / methods*
  • Peptides / chemical synthesis
  • Peptides / metabolism
  • Phosphoribosylglycinamide Formyltransferase / genetics
  • Phosphoribosylglycinamide Formyltransferase / metabolism
  • Phosphorylation
  • Protein Processing, Post-Translational*
  • Proteomics / methods*
  • Proto-Oncogene Proteins c-akt / genetics
  • Proto-Oncogene Proteins c-akt / metabolism*
  • Purines / metabolism*
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Serine / metabolism
  • Signal Transduction
  • Threonine / metabolism
  • Ubiquitination

Substances

  • Peptides
  • Purines
  • Recombinant Fusion Proteins
  • enhanced green fluorescent protein
  • Green Fluorescent Proteins
  • Threonine
  • Serine
  • Phosphoribosylglycinamide Formyltransferase
  • Amidophosphoribosyltransferase
  • Proto-Oncogene Proteins c-akt
  • Adenylosuccinate Lyase
  • Carbon-Nitrogen Ligases
  • GART protein, human