Emerging Analytical Techniques for Rapid Pathogen Identification and Susceptibility Testing

Annu Rev Anal Chem (Palo Alto Calif). 2019 Jun 12;12(1):41-67. doi: 10.1146/annurev-anchem-061318-115529. Epub 2019 Apr 2.

Abstract

In the face of looming threats from multi-drug resistant microorganisms, there is a growing need for technologies that will enable rapid identification and drug susceptibility profiling of these pathogens in health care settings. In particular, recent progress in microfluidics and nucleic acid amplification is pushing the boundaries of timescale for diagnosing bacterial infections. With a diverse range of techniques and parallel developments in the field of analytical chemistry, an integrative perspective is needed to understand the significance of these developments. This review examines the scope of new developments in assay technologies grouped by key enabling domains of research. First, we examine recent development in nucleic acid amplification assays for rapid identification and drug susceptibility testing in bacterial infections. Next, we examine advances in microfluidics that facilitate acceleration of diagnostic assays via integration and scale. Lastly, recentdevelopments in biosensor technologies are reviewed. We conclude this review with perspectives on the use of emerging concepts to develop paradigm-changing assays.

Keywords: PCR; antibiotic susceptibility testing; high-resolution melting analysis; microfluidics; molecular diagnostics; point-of-care; polymerase chain reaction.

Publication types

  • Research Support, N.I.H., Extramural
  • Review

MeSH terms

  • Animals
  • Anti-Bacterial Agents / pharmacology
  • Bacteria / drug effects*
  • Bacteria / genetics
  • Bacteria / isolation & purification*
  • Bacterial Infections / diagnosis
  • Bacterial Infections / drug therapy
  • Bacterial Infections / microbiology*
  • Biosensing Techniques / economics
  • Biosensing Techniques / methods
  • Humans
  • Microbial Sensitivity Tests / economics
  • Microbial Sensitivity Tests / methods*
  • Microfluidic Analytical Techniques / economics
  • Microfluidic Analytical Techniques / methods*
  • Nucleic Acid Amplification Techniques / economics
  • Nucleic Acid Amplification Techniques / methods*
  • Point-of-Care Systems / economics
  • Time Factors

Substances

  • Anti-Bacterial Agents