Constructing a synthetic pathway for acetyl-coenzyme A from one-carbon through enzyme design

Nat Commun. 2019 Mar 26;10(1):1378. doi: 10.1038/s41467-019-09095-z.

Abstract

Acetyl-CoA is a fundamental metabolite for all life on Earth, and is also a key starting point for the biosynthesis of a variety of industrial chemicals and natural products. Here we design and construct a Synthetic Acetyl-CoA (SACA) pathway by repurposing glycolaldehyde synthase and acetyl-phosphate synthase. First, we design and engineer glycolaldehyde synthase to improve catalytic activity more than 70-fold, to condense two molecules of formaldehyde into one glycolaldehyde. Second, we repurpose a phosphoketolase to convert glycolaldehyde into acetyl-phosphate. We demonstrated the feasibility of the SACA pathway in vitro, achieving a carbon yield ~50%, and confirmed the SACA pathway by 13C-labeled metabolites. Finally, the SACA pathway was verified by cell growth using glycolaldehyde, formaldehyde and methanol as supplemental carbon source. The SACA pathway is proved to be the shortest, ATP-independent, carbon-conserving and oxygen-insensitive pathway for acetyl-CoA biosynthesis, opening possibilities for producing acetyl-CoA-derived chemicals from one-carbon resources in the future.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetaldehyde / analogs & derivatives*
  • Acetaldehyde / metabolism
  • Acetyl Coenzyme A / biosynthesis*
  • Aldehyde-Lyases / genetics
  • Aldehyde-Lyases / metabolism*
  • Carbon / metabolism*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Formaldehyde / metabolism*
  • Metabolic Engineering
  • Organophosphates / metabolism*
  • Plasmids

Substances

  • Organophosphates
  • Formaldehyde
  • acetyl phosphate
  • Acetyl Coenzyme A
  • Carbon
  • Aldehyde-Lyases
  • phosphoketolase
  • Acetaldehyde
  • glycolaldehyde