Single-Cell Genomics

Clin Chem. 2019 Aug;65(8):972-985. doi: 10.1373/clinchem.2017.283895. Epub 2019 Mar 14.

Abstract

Background: Single-cell genomics is an approach to investigate cell heterogeneity and to identify new molecular features correlated with clinical outcomes. This approach allows identification of the complexity of cell diversity in a sample without the loss of information that occurs when multicellular or bulk tissue samples are analyzed.

Content: The first single-cell RNA-sequencing study was published in 2009, and since then many more studies and single-cell sequencing methods have been published. These studies have had a major impact on several fields, including microbiology, neurobiology, cancer, and developmental biology. Recently, improvements in reliability and the development of commercial single-cell isolation platforms are opening the potential of this technology to the clinical laboratory.

Summary: In this review we provide an overview of the current state of single-cell genomics. We describe opportunities in clinical research and medical applications.

Publication types

  • Historical Article
  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Cell Separation / methods
  • Epigenomics
  • Gene Amplification
  • Genomics / methods*
  • History, 20th Century
  • History, 21st Century
  • Humans
  • Immunity / genetics
  • Microbiota / genetics
  • Neoplasms / genetics
  • Reproducibility of Results
  • Sequence Analysis, RNA / methods*
  • Single-Cell Analysis / history
  • Single-Cell Analysis / methods*
  • Single-Cell Analysis / trends
  • Transcriptome / genetics