Genome-wide analysis of the HAK potassium transporter gene family reveals asymmetrical evolution in tobacco (Nicotiana tabacum)

Genome. 2019 Apr;62(4):267-278. doi: 10.1139/gen-2018-0187. Epub 2019 Mar 13.

Abstract

Being an essential mineral nutrient, potassium (K+) plays numerous important roles in plant growth and development and determines the yield and quality of crop products. The cellular level of K+ is controlled to a large extent by the K+ transporter, which belongs to the KT/HAK/KUP (HAK) family. However, little is known about these genes in tobacco. In this study, we surveyed the tobacco genome and identified 41 putative NtHAK genes (NtHAKS1-NtHAKS21 and NtHAKT1-NtHAKT20). Investigation of the cis-elements in upstream regions of these NtHAK genes suggests that members of this family respond to environmental cues and phytohormones. Expression data mining reveals that NtHAK genes showed clear sub-genome dominance. In all, these results will provide molecular insights into K+ transporter research in tobacco.

Keywords: asymmetrical evolution; famille de gènes; gene family; potassium; tabac; tobacco; évolution asymétrique.

MeSH terms

  • Amino Acid Motifs
  • Cation Transport Proteins / genetics*
  • Evolution, Molecular*
  • Gene Expression Profiling
  • Genes, Plant*
  • Multigene Family
  • Nicotiana / genetics*
  • Nicotiana / metabolism
  • Phylogeny
  • Potassium / metabolism*
  • Promoter Regions, Genetic

Substances

  • Cation Transport Proteins
  • Potassium