Pocket-based Lead Optimization Strategy for the Design and Synthesis of Chitinase Inhibitors

J Agric Food Chem. 2019 Apr 3;67(13):3575-3582. doi: 10.1021/acs.jafc.9b00837. Epub 2019 Mar 22.

Abstract

Insect chitinases play an indispensable role in shedding old cuticle during molting. Targeting chitinase inhibition is a promising pest control strategy. Of ChtI, a chitinase from the destructive insect pest Ostrinia furnacalis (Asian corn borer), has been suggested as a potential target for designing green pesticides. A 4,5,6,7-tetrahydrobenzo[ b]thiophene-3-carboxylate scaffold was previously obtained, and further derivatization generated the lead compound 1 as Of ChtI inhibitor. Here, based on the predicted binding mode of compound 1, the pocket-based lead optimization strategy was applied. A series of analogues was synthesized, and their inhibitory activities against Of ChtI were evaluated. Compound 8 with 6- tert-pentyl showed preferential inhibitory activity with a Ki value of 0.71 μM. Their structure-activity relationships suggested that the compound with larger steric hindrance at the 6-nonpolar group was essential for inhibitory activity due to its stronger interactions with surrounding amino acids. This work provides a strategy for designing potential chitinase inhibitors.

Keywords: Ostrinia furnacalis; chitinase; inhibitors; lead optimization; pesticide.

MeSH terms

  • Animals
  • Catalytic Domain
  • Chitinases / antagonists & inhibitors*
  • Chitinases / genetics
  • Chitinases / metabolism
  • Drug Design
  • Enzyme Inhibitors / chemistry*
  • Enzyme Inhibitors / pharmacology
  • Insect Proteins / antagonists & inhibitors*
  • Insect Proteins / genetics
  • Insect Proteins / metabolism
  • Insecticides / chemistry*
  • Insecticides / pharmacology
  • Kinetics
  • Moths / chemistry
  • Moths / drug effects
  • Moths / enzymology*
  • Protein Domains

Substances

  • Enzyme Inhibitors
  • Insect Proteins
  • Insecticides
  • Chitinases