Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation

Roland S Kun; Ana Carolina S Gomes; Kristiina S Hildén; Sonia Salazar Cerezo; Miia R Mäkelä; Ronald P de Vries

doi:10.1016/j.biotechadv.2019.02.017

Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation

Biotechnol Adv. 2019 Nov 1;37(6):107361. doi: 10.1016/j.biotechadv.2019.02.017. Epub 2019 Feb 27.

Authors

Roland S Kun¹, Ana Carolina S Gomes², Kristiina S Hildén³, Sonia Salazar Cerezo¹, Miia R Mäkelä⁴, Ronald P de Vries⁵

Affiliations

¹ Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.
² Institute of Biosciences, Humanities and Exact Sciences, São Paulo State University (UNESP), Cristóvão Colombo, 2265 São José do Rio Preto, Brazil.
³ Fungal Genetics and Biotechnology, Department of Microbiology, University of Helsinki, Viikinkaari 9, 00790 Helsinki, Finland.
⁴ Fungal Genetics and Biotechnology, Department of Microbiology, University of Helsinki, Viikinkaari 9, 00790 Helsinki, Finland. Electronic address: miia.r.makela@helsinki.fi.
⁵ Fungal Physiology, Westerdijk Fungal Biodiversity Institute & Fungal Molecular Physiology, Utrecht University, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands. Electronic address: r.devries@westerdijkinstitute.nl.

PMID: 30825514
DOI: 10.1016/j.biotechadv.2019.02.017

Abstract

Fungal strain engineering is commonly used in many areas of biotechnology, including the production of plant biomass degrading enzymes. Its aim varies from the production of specific enzymes to overall increased enzyme production levels and modification of the composition of the enzyme set that is produced by the fungus. Strain engineering involves a diverse range of methodologies, including classical mutagenesis, genetic engineering and genome editing. In this review, the main approaches for strain engineering of filamentous fungi in the field of plant biomass degradation will be discussed, including recent and not yet implemented methods, such as CRISPR/Cas9 genome editing and adaptive evolution.

Keywords: Adaptive evolution; Chemical mutagenesis; Epigenetics; Genetic engineering; Genome editing; Omics; UV mutagenesis.

Publication types

Research Support, Non-U.S. Gov't
Review

MeSH terms

Biomass*
CRISPR-Cas Systems
Clustered Regularly Interspaced Short Palindromic Repeats
Gene Editing
Genetic Engineering