Network Analysis of Depression-Related Transcriptomic Profiles

Neuromolecular Med. 2019 Jun;21(2):143-149. doi: 10.1007/s12017-019-08527-9. Epub 2019 Mar 1.

Abstract

Major depressive disorder is a common debilitating disorder that is associated with increased morbidity and mortality. However, the molecular mechanism underlying depression remains largely unknown. The current study investigated the association of depression with blood gene expression using data from the Alzheimer's Disease Neuroimaging Initiative (ADNI). Depression was measured by the geriatric depression scale, and the blood gene expression was measured by the Affymetrix Human Genome U219 Array. Linear regression was used to test the association between gene expression and depression, and the model was adjusted for age and sex. A total of 671 participants were included in our study (mean age 75 ± 8 years, 43.2% women). We found three genes were associated with depression, including COL1A2 (P = 8.9 × 10-8), RNF150 (P = 1.4 × 10-7) and CTGF (P = 8.3 × 10-7). An interaction network was built, and the pathway analysis indicated that many depression-related genes were involved in the neurotrophin signaling pathway (P = 2.1 × 10-7). Future studies are necessary to validate our findings and further investigate potential mechanism of depression.

Keywords: Depression; Gene expression; Interaction network.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Aged
  • Aged, 80 and over
  • Alzheimer Disease / complications
  • Alzheimer Disease / genetics*
  • Alzheimer Disease / metabolism
  • Collagen Type I / genetics*
  • Collagen Type I / physiology
  • Connective Tissue Growth Factor / genetics*
  • Connective Tissue Growth Factor / physiology
  • Depression / etiology
  • Depression / genetics*
  • Depression / metabolism
  • Depressive Disorder, Major / etiology
  • Depressive Disorder, Major / genetics*
  • Depressive Disorder, Major / metabolism
  • Female
  • Gene Expression Profiling
  • Gene Regulatory Networks*
  • Humans
  • Linear Models
  • Male
  • Membrane Proteins / genetics*
  • Membrane Proteins / physiology
  • Psychiatric Status Rating Scales
  • Transcriptome*

Substances

  • CCN2 protein, human
  • COL1A2 protein, human
  • Collagen Type I
  • Membrane Proteins
  • RNF150 protein, human
  • Connective Tissue Growth Factor