Genome-wide characterization revealed role of NBS-LRR genes during powdery mildew infection in Vitis vinifera

Genomics. 2020 Jan;112(1):312-322. doi: 10.1016/j.ygeno.2019.02.011. Epub 2019 Feb 22.

Abstract

NBS-LRR comprises a large class of disease resistance (R) proteins that play a widespread role in plant protection against pathogens. In grapevine, powdery mildew cause significant losses in its productivity and efforts are being directed towards finding of resistance loci or genes imparting resistance/tolerance against such fungal diseases. In the present study, we performed genome-wide analysis of NBS-LRR genes during PM infection in grapevine. We identified 18, 23, 12, 16, 10, 10, 9, 20 and 14 differentially expressed NBS-LRR genes in response to PM infection in seven partially PM-resistant (DVIT3351.27, Husseine, Karadzhandal, Khalchili, Late vavilov, O34-16, Sochal) and 2 PM-susceptible (Carignan and Thompson seedless) V. vinifera accessions. Further, the identified sequences were characterized based on chromosomal locations, physicochemical properties, gene structure and motif analysis, and functional annotation by Gene Ontology (GO) mapping. The NBS-LRR genes responsive to powdery mildew could potentially be exploited to improve resistance in grapes.

Keywords: Expression; Fungal infections; Grapevine; NBS-LRR genes; Powdery mildew resistance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ascomycota*
  • Chromosomes, Plant
  • Disease Resistance / genetics
  • Genome, Plant
  • Multigene Family
  • NLR Proteins / chemistry
  • NLR Proteins / classification
  • NLR Proteins / genetics*
  • NLR Proteins / metabolism
  • Phylogeny
  • Plant Diseases / genetics
  • Plant Diseases / microbiology*
  • Plant Proteins / chemistry
  • Plant Proteins / classification
  • Plant Proteins / genetics*
  • Plant Proteins / metabolism
  • Promoter Regions, Genetic
  • Vitis / genetics*
  • Vitis / microbiology*

Substances

  • NLR Proteins
  • Plant Proteins