Highly parallel remote SPR detection of DNA hybridization by micropillar optical arrays

Anal Bioanal Chem. 2019 Apr;411(11):2249-2259. doi: 10.1007/s00216-019-01689-2. Epub 2019 Feb 23.

Abstract

Remote detection by surface plasmon resonance (SPR) is demonstrated through microstructured optical arrays of conical nanotips or micropillars. Both geometries were fabricated by controlled wet chemical etching of bundles comprising several thousands of individual optical fibers. Their surface was coated by a thin gold layer in order to confer SPR properties. The sensitivity and resolution of both shapes were evaluated as a function of global optical index changes in remote detection mode performed by imaging through the etched optical fiber bundle itself. With optimized geometry of micropillar arrays, resolution was increased up to 10-4 refractive index units. The gold-coated micropillar arrays were functionalized with DNA and were able to monitor remotely the kinetics of DNA hybridization with complementary strands. We demonstrate for the first time highly parallel remote SPR detection of DNA via microstructured optical arrays. The obtained SPR sensitivity combined with the remote intrinsic properties of the optical fiber bundles should find promising applications in biosensing, remote SPR imaging, a lab-on-fiber platform dedicated to biomolecular analysis, and in vivo endoscopic diagnosis. Graphical abstract We present a single fabrication step to structure simultaneously all the individual cores of an optical fiber bundle composed of thousands of fibers. The resulting sensor is optimized for reflection mode (compatible with in vivo applications) and is used to perform for the first time highly parallel remote SPR detection of DNA via several thousands of individual optical fiber SPR sensors paving the way for multiplexed biological detection.

Keywords: DNA hybridization; Micropillar arrays; Optical fiber bundles; Remote detection; Surface plasmon resonance.

MeSH terms

  • DNA / analysis*
  • Equipment Design
  • Fiber Optic Technology / instrumentation
  • Gold / chemistry
  • Immobilized Nucleic Acids / chemistry
  • Nucleic Acid Hybridization*
  • Optical Fibers*
  • Refractometry
  • Surface Plasmon Resonance / instrumentation*

Substances

  • Immobilized Nucleic Acids
  • Gold
  • DNA