A Research-inspired biochemistry laboratory module-combining expression, purification, crystallization, structure-solving, and characterization of a flavodoxin-like protein

Biochem Mol Biol Educ. 2019 May;47(3):318-332. doi: 10.1002/bmb.21218. Epub 2019 Feb 11.

Abstract

Many laboratory courses consist of short and seemingly unconnected individual laboratory exercises. To increase the course consistency, relevance, and student engagement, we have developed a research-inspired and project-based module, "From Gene to Structure and Function". This 2.5-week full-day biochemistry and structural biology module covers protein expression, purification, structure solving, and characterization. The module is centered around the flavodoxin-like protein NrdI, involved in the activation of the bacterial ribonucleotide reductase enzyme system. Through an in-depth focus on one specific protein, the students will learn the basic laboratory skills needed in order to generate a broader knowledge and breadth within the field. With respect to generic skills, the students report their findings as a scientific article, with the aim to learn to present concise research results and write scientific papers. The current research-inspired project has the potential of being further developed into a more discovery-driven project and extended to include other molecular biological techniques or biochemical/biophysical characterizations. In student evaluations, this research-inspired laboratory course has received very high ratings and been highly appreciated, where the students have gained research experience for more independent future work in the laboratory. © 2019 The Authors. Biochemistry and Molecular Biology Education published by Wiley Periodicals, Inc. on behalf of International Union of Biochemistry and Molecular Biology, 47(3):318-332, 2019.

Keywords: Biochemistry; crystallography; laboratory exercises; project-based; protein; protein chemistry; proteins; purification; research-inspired; spectroscopy; structural biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biochemistry
  • Crystallization
  • Flavodoxin / biosynthesis
  • Flavodoxin / chemistry*
  • Flavodoxin / isolation & purification*
  • Laboratories*
  • Learning*
  • Models, Molecular
  • Molecular Structure
  • Research / education*
  • Students

Substances

  • Flavodoxin