Analysis of Transcriptional Regulation in Bone Cells

Methods Mol Biol. 2019:1914:145-167. doi: 10.1007/978-1-4939-8997-3_8.

Abstract

Transcription is a process by which the rate of RNA synthesis is regulated. Here we describe the techniques for carrying out promoter-reporter assays, electrophoretic mobility shift assays, chromosome conformation capture (3C) assays, chromatin immunoprecipitation assays, and CRISPR-Cas9 assay, five commonly used methods for studying and altering gene transcription.

Keywords: CRISPR-Cas9; ChIP; Chromatin; Chromosome conformation capture (3C) technology; EMSA; Gene; Immunoprecipitation; Promoter; Transcription.

MeSH terms

  • Bone and Bones / cytology*
  • CRISPR-Cas Systems / genetics
  • Cell Culture Techniques / instrumentation
  • Cell Culture Techniques / methods
  • Cell Line, Tumor
  • Cell Separation / instrumentation
  • Cell Separation / methods
  • Chromatin Immunoprecipitation / instrumentation
  • Chromatin Immunoprecipitation / methods*
  • Electrophoretic Mobility Shift Assay / instrumentation
  • Electrophoretic Mobility Shift Assay / methods*
  • Flow Cytometry / instrumentation
  • Flow Cytometry / methods
  • Gene Editing / instrumentation
  • Gene Editing / methods
  • Gene Expression Regulation*
  • Genes, Reporter / genetics
  • Humans
  • Promoter Regions, Genetic / genetics
  • Transcription, Genetic*