T cell antigen discovery via trogocytosis

Nat Methods. 2019 Feb;16(2):183-190. doi: 10.1038/s41592-018-0305-7. Epub 2019 Jan 28.

Abstract

T cell receptor (TCR) ligand discovery is essential for understanding and manipulating immune responses to tumors. We developed a cell-based selection platform for TCR ligand discovery that exploits a membrane transfer phenomenon called trogocytosis. We discovered that T cell membrane proteins are transferred specifically to target cells that present cognate peptide-major histocompatibility complex (MHC) molecules. Co-incubation of T cells expressing an orphan TCR with target cells collectively presenting a library of peptide-MHCs led to specific labeling of cognate target cells, enabling isolation of these target cells and sequencing of the cognate TCR ligand. We validated this method for two clinically employed TCRs and further used the platform to identify the cognate neoepitope for a subject-derived neoantigen-specific TCR. Thus, target cell trogocytosis is a robust tool for TCR ligand discovery that will be useful for studying basic tumor immunology and identifying new targets for immunotherapy.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptive Immunity
  • Animals
  • Antigens / chemistry*
  • Biotinylation
  • DNA / analysis
  • Epitopes / chemistry
  • Gene Library
  • Genetic Techniques*
  • HEK293 Cells
  • Humans
  • Immunotherapy
  • Jurkat Cells
  • K562 Cells
  • Ligands
  • Mice
  • Peptides / chemistry
  • Phagocytosis
  • Receptors, Antigen, T-Cell / chemistry*
  • T-Lymphocytes / cytology*
  • T-Lymphocytes / immunology

Substances

  • Antigens
  • Epitopes
  • Ligands
  • Peptides
  • Receptors, Antigen, T-Cell
  • DNA