Exome sequencing identifies a de novo FOXA2 variant in a patient with syndromic diabetes

Pediatr Diabetes. 2019 May;20(3):366-369. doi: 10.1111/pedi.12814. Epub 2019 Feb 17.

Abstract

Objective: When diabetes is associated with congenital malformations, without autoimmune antibodies, a genetic cause is suspected. Here, we aimed to identify a defective gene that led to diabetes.

Research design and methods: We performed an exome analysis of an index case and his healthy parents.

Results: The child presented with childhood-onset diabetes, congenital hypopituitarism, cardiac malformation, and anal atresia. A DNA analysis revealed a heterozygous de novo pathogenic variant in the developmental transcription factor, forkhead box A2 (FOXA2). The mutation resided in the DNA-binding domain, which is highly conserved among species. Tridimensional molecular dynamics simulation modeling predicted an altered interaction between the mutated protein and DNA.

Conclusions: A defect in the FOXA2 DNA-binding domain was associated with childhood-onset diabetes and multiple congenital anomalies, which reflected the pleiotropic nature of the gene. This report extends the recently described phenotype of neonatal hypoglycemia to later-onset diabetes. We suggest to include FOXA2 analysis for neonatal hypoglycemia and to implement a long-term follow-up, particularly for the risk of diabetes.

Keywords: MODY; monogenic diabetes; whole exome.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Child
  • DNA Mutational Analysis / methods
  • Diabetes Mellitus / congenital*
  • Diabetes Mellitus / genetics*
  • Exome Sequencing
  • Hepatocyte Nuclear Factor 3-beta / chemistry
  • Hepatocyte Nuclear Factor 3-beta / genetics*
  • Humans
  • Leucine / genetics
  • Male
  • Models, Molecular
  • Mutation, Missense*
  • Polymorphism, Single Nucleotide
  • Proline / genetics
  • Syndrome

Substances

  • FOXA2 protein, human
  • Hepatocyte Nuclear Factor 3-beta
  • Proline
  • Leucine