Potent, multi-target serine protease inhibition achieved by a simplified β-sheet motif

PLoS One. 2019 Jan 22;14(1):e0210842. doi: 10.1371/journal.pone.0210842. eCollection 2019.

Abstract

Engagement of an extended β-sheet is a common substrate/inhibitor interaction at the active site of serine proteases and is an important feature of Laskowski mechanism inhibitors that present a substrate-like loop to a target protease. This loop is cleaved but subsequently relegated forming a stable inhibitor/protease complex. Laskowski inhibitors are ubiquitous in nature and are used extensively in serine protease inhibitor design. However, most studies concentrate on introducing new sidechain interactions rather than the direct contributions of the substrate-like β-sheet to enzyme inhibition. Here we report the crystal structure of an simplified β-sheet inhibitory motif within the Sunflower Trypsin Inhibitor (SFTI) in complex with trypsin. We show that the intramolecular hydrogen bond network of this SFTI variant (SFTI-TCTR) engages the inhibitor sidechains that would normally interact with a target protease, giving mainchain interactions a more prominent role in complex formation. Despite having reduced sidechain interactions, this SFTI variant is remarkably potent and inhibits a diverse range of serine proteases. Crystal structural analysis and molecular modelling of SFTI-TCTR complexes again indicates an interface dominated by β-sheet interactions, highlighting the importance of this motif and the adaptability of SFTI as a scaffold for inhibitor design.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Animals
  • Cattle
  • Crystallography, X-Ray
  • Helianthus / chemistry
  • Hydrogen Bonding
  • Models, Molecular
  • Molecular Dynamics Simulation
  • Peptides, Cyclic / chemistry
  • Peptides, Cyclic / pharmacology
  • Plant Proteins / chemistry
  • Plant Proteins / pharmacology
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Serine Proteinase Inhibitors / chemistry*
  • Serine Proteinase Inhibitors / pharmacology*
  • Static Electricity
  • Trypsin / chemistry*
  • Trypsin Inhibitors / chemistry
  • Trypsin Inhibitors / pharmacology

Substances

  • Peptides, Cyclic
  • Plant Proteins
  • Serine Proteinase Inhibitors
  • Trypsin Inhibitors
  • Trypsin

Grants and funding

This work was supported by a grant from the Australian National Health and Medical Research Council to JMH, #1059410. The organization played no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.