Uncovering Flavivirus Host Dependency Factors through a Genome-Wide Gain-of-Function Screen

Viruses. 2019 Jan 15;11(1):68. doi: 10.3390/v11010068.

Abstract

Flaviviruses, such as dengue (DENV), West Nile (WNV), yellow fever (YFV) and Zika (ZIKV) viruses, are mosquito-borne pathogens that present a major risk to global public health. To identify host factors that promote flavivirus replication, we performed a genome-wide gain-of-function cDNA screen for human genes that enhance the replication of flavivirus reporter particles in human cells. The screen recovered seventeen potential host proteins that promote viral replication, including the previously known dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit (DDOST). Using silencing approaches, we validated the role of four candidates in YFV and WNV replication: ribosomal protein L19 (RPL19), ribosomal protein S3 (RPS3), DDOST and importin 9 (IPO9). Applying a panel of virological, biochemical and microscopic methods, we validated further the role of RPL19 and DDOST as host factors required for optimal replication of YFV, WNV and ZIKV. The genome-wide gain-of-function screen is thus a valid approach to advance our understanding of flavivirus replication.

Keywords: Flavivirus; Genome-wide gain-of-function screen; Host-pathogen interactions; Oligosaccharyltransferase complex; Ribosomal proteins; Virus replication; West Nile virus; Yellow fever virus; Zika virus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Line
  • Culicidae / virology
  • Dengue Virus / genetics
  • Flavivirus / genetics*
  • Flavivirus / physiology
  • Gene Library
  • Hexosyltransferases / genetics
  • Host-Pathogen Interactions / genetics*
  • Humans
  • Karyopherins / genetics
  • Membrane Proteins / genetics
  • Ribosomal Proteins / genetics
  • Virus Replication*
  • West Nile virus / genetics
  • Zika Virus / genetics

Substances

  • IPO9 protein, human
  • Karyopherins
  • Membrane Proteins
  • RPL19 protein, human
  • Ribosomal Proteins
  • ribosomal protein S3
  • Hexosyltransferases
  • dolichyl-diphosphooligosaccharide - protein glycotransferase