FisOmics: A portal of fish genomic resources

Genomics. 2019 Dec;111(6):1923-1928. doi: 10.1016/j.ygeno.2019.01.003. Epub 2019 Jan 3.

Abstract

An online portal, accessible at URL: http://mail.nbfgr.res.in/FisOmics/, was developed that features different genomic databases and tools. The portal, named as FisOmics, acts as a platform for sharing fish genomic sequences and related information in addition to facilitating the access of high-performance computational resources for genome and proteome data analyses. It provides the ability for quarrying, analysing and visualizing genomic sequences and related information. The featured databases in FisOmics are in the World Wide Web domain already. The aim to develop portal was to provide a nodal point to access the featured databases and work conveniently. Presently, FisOmics includes databases on barcode sequences, microsatellite markers, mitogenome sequences, hypoxia-responsive genes and karyology of fishes. Besides, it has a link to other molecular resources and reports on the on-going activities and research achievements.

Keywords: Bioinformatics; FisOmics; Fish genomics; HPC; India; Portal; Relational database.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chromosomes
  • Crustacea / genetics
  • DNA Barcoding, Taxonomic
  • Databases, Genetic*
  • Datasets as Topic*
  • Fish Proteins / genetics*
  • Fishes / genetics*
  • Hypoxia / genetics
  • Internet
  • Microsatellite Repeats
  • Mollusca / genetics
  • User-Computer Interface

Substances

  • Fish Proteins