Directed Evolution of Sulfonylurea Esterase and Characterization of a Variant with Improved Activity

J Agric Food Chem. 2019 Jan 23;67(3):836-843. doi: 10.1021/acs.jafc.8b06198. Epub 2019 Jan 8.

Abstract

Esterase SulE detoxicates a variety of sulfonylurea herbicides through de-esterification. SulE exhibits high activity against thifensulfuron-methyl but low activity against other sulfonylureas. In this study, two variants, m2311 (P80R) and m0569 (P80R and G176A), with improved activity were screened from a mutation library constructed by error-prone PCR. Variant m2311 showed a higher activity against sulfonylureas in comparison variant m0569 and was further investigated. The kcat/ Km value of variant m2311 for metsulfuron-methyl, sulfometuron-methyl, chlorimuron-ethyl, tribenuron-methyl, and ethametsulfuron-methyl increased by 3.20-, 1.72-, 2.94-, 2.26- and 2.96-fold, respectively, in comparison with the wild type. Molecular modeling suggested that the activity improvement of variant m2311 is due to the substitution of Pro80 by arginine, leading to the formation of new hydrogen bonds between the enzyme and substrate. This study facilitates further elucidation of the structure and function of SulE and provides an improved gene resource for the detoxification of sulfonylurea residues and the genetic engineering of sulfonylurea-resistant crops.

Keywords: activity improvement; enzymatic characteristics; error-prone PCR; molecular modeling; sulfonylurea de-esterification esterase SulE.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism*
  • Directed Molecular Evolution
  • Esterases / chemistry
  • Esterases / genetics*
  • Esterases / metabolism*
  • Genetic Variation
  • Herbicides / chemistry
  • Herbicides / metabolism
  • Kinetics
  • Methylocystaceae / chemistry
  • Methylocystaceae / enzymology*
  • Methylocystaceae / genetics
  • Pyrimidines / chemistry
  • Pyrimidines / metabolism
  • Sulfonylurea Compounds / chemistry
  • Sulfonylurea Compounds / metabolism*
  • Thiophenes / chemistry
  • Thiophenes / metabolism

Substances

  • Bacterial Proteins
  • Herbicides
  • Pyrimidines
  • Sulfonylurea Compounds
  • Thiophenes
  • thifensulfuron methyl
  • chlorimuron ethyl
  • Esterases
  • sulfometuron methyl