Design and analysis of EphA2-SAM peptide ligands: A multi-disciplinary screening approach

Bioorg Chem. 2019 Mar:84:434-443. doi: 10.1016/j.bioorg.2018.12.009. Epub 2018 Dec 8.

Abstract

EphA2 receptor plays a critical and debatable function in cancer and is considered a target in drug discovery. Lately, there has been a growing interest in its cytosolic C-terminal SAM domain (EphA2-SAM) as it engages protein modulators of receptor endocytosis and stability. Interestingly, EphA2-SAM binds the SAM domain from the lipid phosphatase Ship2 (Ship2-SAM) mainly producing pro-oncogenic outcomes. In an attempt to discover novel inhibitors of the EphA2-SAM/Ship2-SAM complex with possible anticancer properties, we focused on the central region of Ship2-SAM (known as Mid-Loop interface) responsible for its binding to EphA2-SAM. Starting from the amino acid sequence of the Mid-Loop interface virtual peptide libraries were built through ad hoc inserted mutations with either l- or d- amino acids and screened against EphA2-SAM by docking techniques. A few virtual hits were synthesized and experimentally tested by a variety of direct and competition-type interaction assays relying on NMR (Nuclear Magnetic Resonance), SPR (Surface Plasmon Resonance), MST (Microscale Thermophoresis) techniques. These studies guided the discovery of an original EphA2-SAM ligand antagonist of its interaction with Ship2-SAM.

Keywords: Cancer; EphA2; MST; NMR; SAM domains; SPR; Ship2; Virtual screening.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Drug Design*
  • Humans
  • Ligands
  • Molecular Docking Simulation*
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptide Library
  • Peptides / blood
  • Peptides / chemistry*
  • Peptides / metabolism
  • Protein Stability
  • Receptor, EphA2 / chemistry*
  • Receptor, EphA2 / metabolism
  • Sterile Alpha Motif

Substances

  • Ligands
  • Peptide Library
  • Peptides
  • Receptor, EphA2