Potential ceRNA networks involved in autophagy suppression of pancreatic cancer caused by chloroquine diphosphate: A study based on differentially‑expressed circRNAs, lncRNAs, miRNAs and mRNAs

Int J Oncol. 2019 Feb;54(2):600-626. doi: 10.3892/ijo.2018.4660. Epub 2018 Dec 10.

Abstract

Autophagy has been reported to be involved in the occurrence and development of pancreatic cancer. However, the mechanism of autophagy‑associated non‑coding RNAs (ncRNAs) in pancreatic cancer remains largely unknown. In the present study, microarrays were used to detect differential expression of mRNAs, microRNAs (miRNAs), long ncRNAs (lncRNAs) and circular RNAs (circRNAs) post autophagy suppression by chloroquine diphosphate in PANC‑1 cells. Collectively, 3,966 mRNAs, 3,184 lncRNAs and 9,420 circRNAs were differentially expressed. Additionally, only two miRNAs (hsa‑miR‑663a‑5p and hsa‑miR‑154‑3p) were underexpressed in the PANC‑1 cells in the autophagy‑suppression group. Furthermore, miR‑663a‑5p with 9 circRNAs, 8 lncRNAs and 46 genes could form a prospective ceRNA network associated with autophagy in pancreatic cancer cells. In addition, another ceRNA network containing miR‑154‑3p, 5 circRNAs, 2 lncRNAs and 11 genes was also constructed. The potential multiple ceRNA, miRNA and mRNA associations may serve pivotal roles in the autophagy of pancreatic cancer cells, which lays the theoretical foundation for subsequent investigations on pancreatic cancer.

Keywords: pancreatic cancer; autophagy; ceRNA; circRNA; lncRNA; chloroquine diphosphate.

MeSH terms

  • Adult
  • Aged
  • Autophagy / drug effects*
  • Cell Line, Tumor
  • Chloroquine / analogs & derivatives*
  • Chloroquine / pharmacology
  • Female
  • Gene Expression Regulation, Neoplastic*
  • Gene Regulatory Networks
  • Humans
  • Male
  • MicroRNAs / metabolism*
  • Middle Aged
  • Pancreatic Neoplasms / genetics*
  • Pancreatic Neoplasms / metabolism
  • RNA / metabolism
  • RNA, Circular
  • RNA, Long Noncoding / metabolism
  • RNA, Messenger / metabolism
  • RNA, Neoplasm / metabolism*

Substances

  • MIRN154 microRNA, human
  • MIRN663 microRNA, human
  • MicroRNAs
  • RNA, Circular
  • RNA, Long Noncoding
  • RNA, Messenger
  • RNA, Neoplasm
  • RNA
  • chloroquine diphosphate
  • Chloroquine