Direct Single-Molecule Observation of Sequential DNA Bending Transitions by the Sox2 HMG Box

Int J Mol Sci. 2018 Dec 4;19(12):3865. doi: 10.3390/ijms19123865.

Abstract

Sox2 is a pioneer transcription factor that initiates cell fate reprogramming through locus-specific differential regulation. Mechanistically, it was assumed that Sox2 achieves its regulatory diversity via heterodimerization with partner transcription factors. Here, utilizing single-molecule fluorescence spectroscopy, we show that Sox2 alone can modulate DNA structural landscape in a dosage-dependent manner. We propose that such stoichiometric tuning of regulatory DNAs is crucial to the diverse biological functions of Sox2, and represents a generic mechanism of conferring functional plasticity and multiplicity to transcription factors.

Keywords: DNA conformational landscape; DNA-protein interactions; Sox2 sequential DNA loading; sequential DNA bending; smFRET; transcription factor dosage; transcription factors.

MeSH terms

  • DNA / chemistry*
  • Fluorescence Resonance Energy Transfer
  • HMG-Box Domains*
  • Models, Molecular
  • Nucleic Acid Conformation*
  • Promoter Regions, Genetic / genetics
  • Protein Binding
  • SOXB1 Transcription Factors / chemistry*
  • Single Molecule Imaging*

Substances

  • SOXB1 Transcription Factors
  • DNA