Application of affinity purification methods for analysis of the nitrogenase system from Azotobacter vinelandii

Methods Enzymol. 2018:613:231-255. doi: 10.1016/bs.mie.2018.10.007. Epub 2018 Nov 23.

Abstract

Nitrogenases are complex two-component metalloenzymes that catalyze biological nitrogen fixation. Three different nitrogenase types are found in the model nitrogen-fixing microbe Azotobacter vinelandii. In the case of the Mo-dependent enzyme, the two catalytic partners are referred to as the Fe protein and MoFe protein. In addition to genes encoding the catalytic components, there are a total of 68 other gene products known to be variously involved in producing, activating, protecting, sustaining, and regulating formation of the Mo-dependent nitrogenase. In order to support experiments designed to gain insight into the catalytic mechanism and assembly of nitrogenase, four different affinity-based purification protocols have been developed. These include an improved Co2+-based Immobilized Metal Affinity Chromatography (IMAC) method for the purification of MoFe protein, a newly developed StrepTactin Affinity Chromatography (STAC) method for the purification of MoFe protein and its assembly intermediates, a combined IMAC and STAC method for isolation of highly pure MoFe protein, and a STAC-based bait-prey method for isolation of complexes variously involved in the maturation process.

Keywords: Affinity purification; Mechanism; Metallocluster; Nitrogen fixation; Nitrogenase.

MeSH terms

  • Azotobacter vinelandii / enzymology*
  • Bacterial Proteins / isolation & purification
  • Bacterial Proteins / metabolism
  • Catalysis
  • Chromatography, Affinity / methods*
  • Molybdoferredoxin / isolation & purification
  • Molybdoferredoxin / metabolism
  • Nitrogenase / isolation & purification
  • Nitrogenase / metabolism*

Substances

  • Bacterial Proteins
  • Molybdoferredoxin
  • Nitrogenase