Discovery of a Natural Syk Inhibitor from Chinese Medicine through a Docking-Based Virtual Screening and Biological Assay Study

Molecules. 2018 Nov 28;23(12):3114. doi: 10.3390/molecules23123114.

Abstract

Spleen tyrosine kinase (Syk) is a critical target protein for treating immunoreceptor signalling-mediated allergies. In this study, a virtual screening of an in-house Chinese medicine database followed by biological assays was carried out to identify novel Syk inhibitors. A molecular docking method was employed to screen for compounds with potential Syk inhibitory activity. Then, an in vitro kinase inhibition assay was performed to verify the Syk inhibitory activity of the virtual screening hits. Subsequently, a β-hexosaminidase release assay was conducted to evaluate the anti-mast cell degranulation activity of the active compounds. Finally, tanshinone I was confirmed as a Syk inhibitor (IC50 = 1.64 μM) and exhibited anti-mast cell degranulation activity in vitro (IC50 = 2.76 μM). Docking studies showed that Pro455, Gln462, Leu377, and Lys458 were key amino acid residues for Syk inhibitory activity. This study demonstrated that tanshinone I is a Syk inhibitor with mast cell degranulation inhibitory activity. Tanshinone I may be a potential lead compound for developing effective and safe Syk-inhibiting drugs.

Keywords: Syk inhibition assay; Syk inhibitors; cell-based assay; tanshinone I; virtual screening.

MeSH terms

  • Animals
  • Cell Degranulation / drug effects
  • Cell Line
  • Databases, Factual*
  • Mast Cells / enzymology*
  • Mast Cells / pathology
  • Medicine, Chinese Traditional*
  • Molecular Docking Simulation*
  • Protein Kinase Inhibitors* / chemistry
  • Protein Kinase Inhibitors* / pharmacology
  • Rats
  • Syk Kinase* / antagonists & inhibitors
  • Syk Kinase* / chemistry
  • Syk Kinase* / metabolism

Substances

  • Protein Kinase Inhibitors
  • Syk Kinase
  • Syk protein, rat