Metazoan evolution of glutamate receptors reveals unreported phylogenetic groups and divergent lineage-specific events

Elife. 2018 Nov 22:7:e35774. doi: 10.7554/eLife.35774.

Abstract

Glutamate receptors are divided in two unrelated families: ionotropic (iGluR), driving synaptic transmission, and metabotropic (mGluR), which modulate synaptic strength. The present classification of GluRs is based on vertebrate proteins and has remained unchanged for over two decades. Here we report an exhaustive phylogenetic study of GluRs in metazoans. Importantly, we demonstrate that GluRs have followed different evolutionary histories in separated animal lineages. Our analysis reveals that the present organization of iGluRs into six classes does not capture the full complexity of their evolution. Instead, we propose an organization into four subfamilies and ten classes, four of which have never been previously described. Furthermore, we report a sister class to mGluR classes I-III, class IV. We show that many unreported proteins are expressed in the nervous system, and that new Epsilon receptors form functional ligand-gated ion channels. We propose an updated classification of glutamate receptors that includes our findings.

Keywords: amphioxus; electrophysiology; evolutionary biology; gene expression; ionotropic glutamate receptors; metabotropic glutamate receptors; neuroscience; phylogenetics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bayes Theorem
  • Binding Sites / genetics
  • Evolution, Molecular*
  • Genetic Variation*
  • HEK293 Cells
  • Humans
  • Models, Molecular
  • Phylogeny
  • Protein Domains
  • Receptors, Ionotropic Glutamate / chemistry
  • Receptors, Ionotropic Glutamate / classification
  • Receptors, Ionotropic Glutamate / genetics*
  • Receptors, Metabotropic Glutamate / chemistry
  • Receptors, Metabotropic Glutamate / classification
  • Receptors, Metabotropic Glutamate / genetics*
  • Sequence Homology, Amino Acid

Substances

  • Receptors, Ionotropic Glutamate
  • Receptors, Metabotropic Glutamate

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.