Structure of human telomere G-quadruplex in the presence of a model drug along the thermal unfolding pathway

Nucleic Acids Res. 2018 Dec 14;46(22):11927-11938. doi: 10.1093/nar/gky1092.

Abstract

A multi-technique approach, combining circular dichroism spectroscopy, ultraviolet resonance Raman spectroscopy and small angle scattering techniques, has been deployed to elucidate how the structural features of the human telomeric G-quadruplex d[A(GGGTTA)3GGG] (Tel22) change upon thermal unfolding. The system is studied both in the free form and when it is bound to Actinomycin D (ActD), an anticancer ligand with remarkable conformational flexibility. We find that at room temperature binding of Tel22 with ActD involves end-stacking upon the terminal G-tetrad. Structural evidence for drug-driven dimerization of a significant fraction of the G-quadruplexes is provided. When the temperature is raised, both free and bound Tel22 undergo melting through a multi-state process. We show that in the intermediate states of Tel22 the conformational equilibrium is shifted toward the (3+1) hybrid-type, while a parallel structure is promoted in the complex. The unfolded state of the free Tel22 is consistent with a self-avoiding random-coil conformation, whereas the high-temperature state of the complex is observed to assume a quite compact form. Such an unprecedented high-temperature arrangement is caused by the persistent interaction between Tel22 and ActD, which stabilizes compact conformations even in the presence of large thermal structural fluctuations.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / chemistry*
  • Antineoplastic Agents / chemistry*
  • Binding Sites
  • Dactinomycin / chemistry*
  • Dimerization
  • G-Quadruplexes*
  • Hot Temperature
  • Humans
  • Kinetics
  • Ligands
  • Models, Molecular
  • Nucleic Acid Denaturation
  • Telomere / chemistry*
  • Thermodynamics

Substances

  • Anti-Bacterial Agents
  • Antineoplastic Agents
  • Ligands
  • Dactinomycin