SNIP1 Recruits TET2 to Regulate c-MYC Target Genes and Cellular DNA Damage Response

Cell Rep. 2018 Nov 6;25(6):1485-1500.e4. doi: 10.1016/j.celrep.2018.10.028.

Abstract

The TET2 DNA dioxygenase regulates gene expression by catalyzing demethylation of 5-methylcytosine, thus epigenetically modulating the genome. TET2 does not contain a sequence-specific DNA-binding domain, and how it is recruited to specific genomic sites is not fully understood. Here we carried out a mammalian two-hybrid screen and identified multiple transcriptional regulators potentially interacting with TET2. The SMAD nuclear interacting protein 1 (SNIP1) physically interacts with TET2 and bridges TET2 to bind several transcription factors, including c-MYC. SNIP1 recruits TET2 to the promoters of c-MYC target genes, including those involved in DNA damage response and cell viability. TET2 protects cells from DNA damage-induced apoptosis dependending on SNIP1. Our observations uncover a mechanism for targeting TET2 to specific promoters through a ternary interaction with a co-activator and many sequence-specific DNA-binding factors. This study also reveals a TET2-SNIP1-c-MYC pathway in mediating DNA damage response, thereby connecting epigenetic control to maintenance of genome stability.

Keywords: DNA damage; DNA demethylation; SNIP1; TET2; c-MYC; cell death; transcription.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Apoptosis / drug effects
  • Apoptosis / genetics
  • Biocatalysis / drug effects
  • Cell Line, Tumor
  • Cisplatin / pharmacology
  • DNA Breaks, Double-Stranded
  • DNA Damage / genetics*
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / metabolism*
  • Dioxygenases
  • Gene Expression Regulation* / drug effects
  • HEK293 Cells
  • Humans
  • Intracellular Signaling Peptides and Proteins / metabolism*
  • Mice, Inbred BALB C
  • Mice, Nude
  • Protein Binding / drug effects
  • Proto-Oncogene Proteins / chemistry
  • Proto-Oncogene Proteins / metabolism*
  • Proto-Oncogene Proteins c-myc / metabolism*
  • RNA-Binding Proteins
  • Transcription, Genetic / drug effects

Substances

  • DNA-Binding Proteins
  • Intracellular Signaling Peptides and Proteins
  • Proto-Oncogene Proteins
  • Proto-Oncogene Proteins c-myc
  • RNA-Binding Proteins
  • SNIP1 protein, human
  • Dioxygenases
  • TET2 protein, human
  • Cisplatin