Characterization of the First OXA-10 Natural Variant with Increased Carbapenemase Activity

Antimicrob Agents Chemother. 2018 Dec 21;63(1):e01817-18. doi: 10.1128/AAC.01817-18. Print 2019 Jan.

Abstract

While carbapenem resistance in Gram-negative bacteria is mainly due to the production of efficient carbapenemases, β-lactamases with a narrower spectrum may also contribute to resistance when combined with additional mechanisms. OXA-10-type class D β-lactamases, previously shown to be weak carbapenemases, could represent such a case. In this study, two novel OXA-10 variants were identified as the sole carbapenem-hydrolyzing enzymes in meropenem-resistant enterobacteria isolated from hospital wastewater and found by next-generation sequencing to express additional β-lactam resistance mechanisms. The new variants, OXA-655 and OXA-656, were carried by two related IncQ1 broad-host-range plasmids. Compared to the sequence of OXA-10, they both harbored a Thr26Met substitution, with OXA-655 also bearing a leucine instead of a valine in position 117 of the SAV catalytic motif. Susceptibility profiling of laboratory strains replicating the natural blaOXA plasmids and of recombinant clones expressing OXA-10 and the novel variants in an isogenic background indicated that OXA-655 is a more efficient carbapenemase. The carbapenemase activity of OXA-655 is due to the Val117Leu substitution, as shown by steady-state kinetic experiments, where the kcat of meropenem hydrolysis was increased 4-fold. In contrast, OXA-655 had no activity toward oxyimino-β-lactams, while its catalytic efficiency against oxacillin was significantly reduced. Moreover, the Val117Leu variant was more efficient against temocillin and cefoxitin. Molecular dynamics indicated that Val117Leu affects the position 117-Leu155 interaction, leading to structural shifts in the active site that may alter carbapenem alignment. The evolutionary potential of OXA-10 enzymes toward carbapenem hydrolysis combined with their spread by promiscuous plasmids indicates that they may pose a future clinical threat.

Keywords: CHDL; IncQ; OXA-10; carbapenemases; β-lactamases.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Anti-Bacterial Agents / chemistry*
  • Anti-Bacterial Agents / metabolism
  • Anti-Bacterial Agents / pharmacology
  • Base Sequence
  • Catalytic Domain
  • Cefoxitin / chemistry
  • Cefoxitin / metabolism
  • Cefoxitin / pharmacology
  • Cloning, Molecular
  • Enterobacteriaceae / drug effects
  • Enterobacteriaceae / enzymology
  • Enterobacteriaceae / genetics*
  • Gene Expression
  • Hospitals
  • Humans
  • Hydrolysis
  • Isoenzymes / chemistry
  • Isoenzymes / genetics
  • Isoenzymes / metabolism
  • Kinetics
  • Meropenem / chemistry
  • Meropenem / metabolism
  • Meropenem / pharmacology
  • Microbial Sensitivity Tests
  • Models, Molecular
  • Oxacillin / chemistry
  • Oxacillin / metabolism
  • Oxacillin / pharmacology
  • Penicillins / chemistry
  • Penicillins / metabolism
  • Penicillins / pharmacology
  • Plasmids / chemistry
  • Plasmids / metabolism
  • Protein Binding
  • Protein Interaction Domains and Motifs
  • Protein Structure, Secondary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Substrate Specificity
  • Wastewater / microbiology
  • beta-Lactam Resistance / genetics*
  • beta-Lactamases / chemistry*
  • beta-Lactamases / genetics
  • beta-Lactamases / metabolism

Substances

  • Anti-Bacterial Agents
  • Isoenzymes
  • Penicillins
  • Recombinant Proteins
  • Waste Water
  • temocillin
  • Cefoxitin
  • beta-lactamase OXA-10
  • beta-Lactamases
  • Meropenem
  • Oxacillin