Picosecond time-resolved fluorescence of ribonuclease T1. A pH and substrate analogue binding study

Biophys J. 1987 Jun;51(6):865-73. doi: 10.1016/S0006-3495(87)83414-8.

Abstract

The tryptophyl fluorescence of ribonuclease T1 decays monoexponentially at pH 5.5, tau = 4.04 ns but on increasing pH, a second short-lived component of 1.5 ns appears with a midpoint between pH 6.5 and 7.0. Both components have the same fluorescence spectrum. Acrylamide quenches both fluorescence components, and the short-lived component is quenched fivefold faster than the predominant long component. Binding of the substrate analogue 2'-guanylic acid at pH 5.5 quenches the fluorescence by 20% and introduces a second decay component, tau = 1.16 ns. Acrylamide quenches both tryptophyl decay components, with similar quenching rates. The fluorescence anisotropy decay of ribonuclease T1 was consistent with a molecule the size of ribonuclease T1 surrounded by a single layer of water at pH 7.4, even though the anisotropy decay at pH 5.5 deviated from Stokes-Einstein behavior. The fluorescence data were interpreted with a model where the tryptophyl residue exists in two conformations, remaining in a hydrophobic pocket. The acrylamide quenching is interpreted with electron transfer theory and suggests that one conformer has the nearest atom approximately 3 A from the protein surface, and the other, approximately 2 A.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Acrylamide
  • Acrylamides / pharmacology
  • Binding Sites
  • Endoribonucleases / metabolism*
  • Fluorescence Polarization
  • Guanine Nucleotides / pharmacology*
  • Guanosine Monophosphate / pharmacology*
  • Kinetics
  • Protein Binding
  • Protein Conformation
  • Ribonuclease T1 / metabolism*
  • Spectrometry, Fluorescence
  • Time Factors
  • Tryptophan
  • X-Ray Diffraction

Substances

  • Acrylamides
  • Guanine Nucleotides
  • Acrylamide
  • Guanosine Monophosphate
  • Tryptophan
  • Endoribonucleases
  • Ribonuclease T1