Big data analysis for evaluating bioinvasion risk

BMC Bioinformatics. 2018 Aug 13;19(Suppl 9):287. doi: 10.1186/s12859-018-2272-5.

Abstract

Background: Global maritime trade plays an important role in the modern transportation industry. It brings significant economic profit along with bioinvasion risk. Species translocate and establish in a non-native area through ballast water and biofouling. Aiming at aquatic bioinvasion issue, people proposed various suggestions for bioinvasion management. Nonetheless, these suggestions only focus on the chance of a port been affected but ignore the port's ability to further spread the invaded species.

Results: To tackle the issues of the existing work, we propose a biosecurity triggering mechanism, where the bioinvasion risk of a port is estimated according to both the invaded risk of a port and its power of being a stepping-stone. To compute the invaded risk, we utilize the automatic identification system data, the ballast water data and marine environmental data. According to the invaded risk of ports, we construct a species invasion network (SIN). The incoming bioinvasion risk is derived from invaded risk data while the invasion risk spreading capability of each port is evaluated by s-core decomposition of SIN.

Conclusions: We illustrate 100 ports in the world that have the highest bioinvasion risk when the invaded risk and stepping-stone bioinvasion risk are equally treated. There are two bioinvasion risk intensive regions, namely the Western Europe (including the Western European margin and the Mediterranean) and the Asia-Pacific, which are just the region with a high growth rate of non-indigenous species and the area that has been identified as a source for many of non-indigenous species discovered elsewhere (especially the Asian clam, which is assumed to be the most invasive species worldwide).

Keywords: Bioinvasion; S-core decomposition; Species invasion network.

MeSH terms

  • Animals
  • Aquatic Organisms
  • Data Mining / methods*
  • Ecosystem*
  • Introduced Species*
  • Models, Theoretical*
  • Oceans and Seas
  • Ships
  • Transportation*
  • Waste Disposal, Fluid*