Empirical Functional PCA for 3D Image Feature Extraction Through Fractal Sampling

Int J Neural Syst. 2019 Mar;29(2):1850040. doi: 10.1142/S0129065718500405. Epub 2018 Aug 29.

Abstract

Medical image classification is currently a challenging task that can be used to aid the diagnosis of different brain diseases. Thus, exploratory and discriminative analysis techniques aiming to obtain representative features from the images play a decisive role in the design of effective Computer Aided Diagnosis (CAD) systems, which is especially important in the early diagnosis of dementia. In this work, we present a technique that allows using specific time series analysis techniques with 3D images. This is achieved by sampling the image using a fractal-based method which preserves the spatial relationship among voxels. In addition, a method called Empirical functional PCA (EfPCA) is presented, which combines Empirical Mode Decomposition (EMD) with functional PCA to express an image in the space spanned by a basis of empirical functions, instead of using components computed by a predefined basis as in Fourier or Wavelet analysis. The devised technique has been used to classify images from the Alzheimer's Disease Neuroimaging Initiative (ADNI) and the Parkinson Progression Markers Initiative (PPMI), achieving accuracies up to 93% and 92% differential diagnosis tasks (AD versus controls and PD versus Controls, respectively). The results obtained validate the method, proving that the information retrieved by our methodology is significantly linked to the diseases.

Keywords: Alzheimer’s disease; EEMD; List Hilbert curve; PET; Parkinson disease; SVM; empirical functional PCA.

MeSH terms

  • Aged
  • Aged, 80 and over
  • Alzheimer Disease / diagnostic imaging*
  • Diagnosis, Computer-Assisted / methods*
  • Diagnosis, Computer-Assisted / standards
  • Female
  • Fractals*
  • Humans
  • Imaging, Three-Dimensional / methods*
  • Imaging, Three-Dimensional / standards
  • Male
  • Middle Aged
  • Neuroimaging / methods*
  • Parkinson Disease / diagnostic imaging*
  • Positron-Emission Tomography / methods*
  • Principal Component Analysis*
  • Sensitivity and Specificity