Designing seryl-tRNA synthetase for improved serylation of selenocysteine tRNAs

FEBS Lett. 2018 Nov;592(22):3759-3768. doi: 10.1002/1873-3468.13271. Epub 2018 Oct 24.

Abstract

Selenocysteine (Sec) lacks a cognate aminoacyl-tRNA synthetase. Instead, seryl-tRNA synthetase (SerRS) produces Ser-tRNASec , which is subsequently converted by selenocysteine synthase to Sec-tRNASec . Escherichia coli SerRS serylates tRNASec poorly; this may hinder efficient production of designer selenoproteins in vivo. Guided by structural modelling and selection for chloramphenicol acetyltransferase activity, we evolved three SerRS variants capable of improved Ser-tRNASec synthesis. They display 10-, 8-, and 4-fold increased kcat /KM values compared to wild-type SerRS using synthetic tRNASec species as substrates. The enzyme variants also facilitate in vivo read-through of a UAG codon in the position of the critical serine146 of chloramphenicol acetyltransferase. These results indicate that the naturally evolved SerRS is capable of further evolution for increased recognition of a specific tRNA isoacceptor.

Keywords: tRNA; protein engineering; selenoproteins; seryl-tRNA synthetase; synthetic biology.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Codon, Terminator / genetics
  • Escherichia coli / genetics*
  • Escherichia coli / metabolism
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics*
  • Escherichia coli Proteins / metabolism
  • Kinetics
  • Models, Molecular
  • Mutation
  • Nucleic Acid Conformation
  • Protein Domains
  • RNA, Transfer, Amino Acid-Specific / chemistry
  • RNA, Transfer, Amino Acid-Specific / genetics*
  • RNA, Transfer, Amino Acid-Specific / metabolism
  • RNA, Transfer, Ser / chemistry
  • RNA, Transfer, Ser / genetics*
  • RNA, Transfer, Ser / metabolism
  • Selenoproteins / genetics
  • Selenoproteins / metabolism
  • Serine / genetics
  • Serine / metabolism
  • Serine-tRNA Ligase / chemistry
  • Serine-tRNA Ligase / genetics*
  • Serine-tRNA Ligase / metabolism
  • Substrate Specificity

Substances

  • Codon, Terminator
  • Escherichia coli Proteins
  • RNA, Transfer, Amino Acid-Specific
  • RNA, Transfer, Ser
  • Selenoproteins
  • tRNA, selenocysteine-
  • Serine
  • Serine-tRNA Ligase