BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands

Elife. 2018 Oct 8:7:e39979. doi: 10.7554/eLife.39979.

Abstract

TOPBP1 and its fission yeast homologueRad4, are critical players in a range of DNA replication, repair and damage signalling processes. They are composed of multiple BRCT domains, some of which bind phosphorylated motifs in other proteins. They thus act as multi-point adaptors bringing proteins together into functional combinations, dependent on post-translational modifications downstream of cell cycle and DNA damage signals. We have now structurally and/or biochemically characterised a sufficient number of high-affinity complexes for the conserved N-terminal region of TOPBP1 and Rad4 with diverse phospho-ligands, including human RAD9 and Treslin, and Schizosaccharomyces pombe Crb2 and Sld3, to define the determinants of BRCT domain specificity. We use this to identify and characterise previously unknown phosphorylation-dependent TOPBP1/Rad4-binding motifs in human RHNO1 and the fission yeast homologue of MDC1, Mdb1. These results provide important insights into how multiple BRCT domains within TOPBP1/Rad4 achieve selective and combinatorial binding of their multiple partner proteins.

Keywords: DNA Repair; S. pombe; Scaffold proteins; biochemistry; chemical biology; human; molecular biophysics; phosphorylation; post-translational modification; structural biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Carrier Proteins / chemistry
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism
  • DNA Damage
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Humans
  • Ligands
  • Models, Molecular
  • Nuclear Proteins / chemistry
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Phosphopeptides / chemistry*
  • Phosphopeptides / genetics
  • Phosphopeptides / metabolism
  • Phosphorylation
  • Protein Binding
  • Protein Domains*
  • Schizosaccharomyces / genetics
  • Schizosaccharomyces / metabolism
  • Schizosaccharomyces pombe Proteins / chemistry*
  • Schizosaccharomyces pombe Proteins / genetics
  • Schizosaccharomyces pombe Proteins / metabolism
  • Transglutaminases / chemistry*
  • Transglutaminases / genetics
  • Transglutaminases / metabolism

Substances

  • Carrier Proteins
  • DNA-Binding Proteins
  • Ligands
  • Nuclear Proteins
  • Phosphopeptides
  • RAD4 protein, S pombe
  • Schizosaccharomyces pombe Proteins
  • TOPBP1 protein, human
  • Transglutaminases