Efficacy of novel immunotherapy regimens in patients with metastatic melanoma with germline CDKN2A mutations

J Med Genet. 2020 May;57(5):316-321. doi: 10.1136/jmedgenet-2018-105610. Epub 2018 Oct 5.

Abstract

Background: Inherited CDKN2A mutation is a strong risk factor for cutaneous melanoma. Moreover, carriers have been found to have poor melanoma-specific survival. In this study, responses to novel immunotherapy agents in CDKN2A mutation carriers with metastatic melanoma were evaluated.

Methods: CDKN2A mutation carriers that have developed metastatic melanoma and undergone immunotherapy treatments were identified among carriers enrolled in follow-up studies for familial melanoma. The carriers' responses were compared with responses reported in phase III clinical trials for CTLA-4 and PD-1 inhibitors. From publicly available data sets, melanomas with somatic CDKN2A mutation were analysed for association with tumour mutational load.

Results: Eleven of 19 carriers (58%) responded to the therapy, a significantly higher frequency than observed in clinical trials (p=0.03, binomial test against an expected rate of 37%). Further, 6 of the 19 carriers (32%) had complete response, a significantly higher frequency than observed in clinical trials (p=0.01, binomial test against an expected rate of 7%). In 118 melanomas with somatic CDKN2A mutations, significantly higher total numbers of mutations were observed compared with 761 melanomas without CDKN2A mutation (Wilcoxon test, p<0.001).

Conclusion: Patients with CDKN2A mutated melanoma may have improved immunotherapy responses due to increased tumour mutational load, resulting in more neoantigens and stronger antitumorous immune responses.

Keywords: cdkn2a; familial melanoma; immunotherapy; metastatic melanoma; tumor mutation burden.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • CTLA-4 Antigen / antagonists & inhibitors
  • CTLA-4 Antigen / genetics*
  • Clinical Trials as Topic
  • Cyclin-Dependent Kinase Inhibitor p16 / genetics*
  • Female
  • Germ-Line Mutation / genetics
  • Humans
  • Immune Checkpoint Inhibitors / administration & dosage
  • Immune Checkpoint Inhibitors / adverse effects
  • Immunotherapy / adverse effects
  • Ipilimumab / administration & dosage
  • Ipilimumab / adverse effects
  • Male
  • Melanoma / drug therapy*
  • Melanoma / genetics
  • Melanoma / pathology
  • Middle Aged
  • Neoplasm Metastasis
  • Programmed Cell Death 1 Receptor / antagonists & inhibitors
  • Programmed Cell Death 1 Receptor / genetics*

Substances

  • CDKN2A protein, human
  • CTLA-4 Antigen
  • CTLA4 protein, human
  • Cyclin-Dependent Kinase Inhibitor p16
  • Immune Checkpoint Inhibitors
  • Ipilimumab
  • PDCD1 protein, human
  • Programmed Cell Death 1 Receptor