Norwegian e-Infrastructure for Life Sciences (NeLS)

F1000Res. 2018 Jun 29:7:ELIXIR-968. doi: 10.12688/f1000research.15119.1. eCollection 2018.

Abstract

The Norwegian e-Infrastructure for Life Sciences (NeLS) has been developed by ELIXIR Norway to provide its users with a system enabling data storage, sharing, and analysis in a project-oriented fashion. The system is available through easy-to-use web interfaces, including the Galaxy workbench for data analysis and workflow execution. Users confident with a command-line interface and programming may also access it through Secure Shell (SSH) and application programming interfaces (APIs). NeLS has been in production since 2015, with training and support provided by the help desk of ELIXIR Norway. Through collaboration with NorSeq, the national consortium for high-throughput sequencing, an integrated service is offered so that sequencing data generated in a research project is provided to the involved researchers through NeLS. Sensitive data, such as individual genomic sequencing data, are handled using the TSD (Services for Sensitive Data) platform provided by Sigma2 and the University of Oslo. NeLS integrates national e-infrastructure storage and computing resources, and is also integrated with the SEEK platform in order to store large data files produced by experiments described in SEEK. In this article, we outline the architecture of NeLS and discuss possible directions for further development.

Keywords: Data management and sharing; ELIXIR Norway; Galaxy; compute and storage infrastructure; federated authentication; integration API; microservices.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Biological Science Disciplines*
  • Database Management Systems*
  • High-Throughput Nucleotide Sequencing
  • Humans
  • Information Dissemination / methods
  • Information Storage and Retrieval / methods
  • Norway

Grants and funding

The work was funded by the ELIXIR.NO (208481/F50) and ELIXIR2 (270068) infrastructure grants from the Research Council of Norway, as well as the Tryggve and Tryggve2 projects from the Nordic e-Infrastructure Collaboration (NeIC).