Parameterization of a coarse-grained model of cholesterol with point-dipole electrostatics

J Comput Aided Mol Des. 2018 Nov;32(11):1259-1271. doi: 10.1007/s10822-018-0164-4. Epub 2018 Sep 26.

Abstract

We present a new coarse-grained (CG) model of cholesterol (CHOL) for the electrostatic-based ELBA force field. A distinguishing feature of our CHOL model is that the electrostatics is modeled by an explicit point dipole which interacts through an ideal vacuum permittivity. The CHOL model parameters were optimized in a systematic fashion, reproducing the electrostatic and nonpolar partitioning free energies of CHOL in lipid/water mixtures predicted by full-detailed atomistic molecular dynamics simulations. The CHOL model has been validated by comparison to structural, dynamic and thermodynamic properties with experimental and atomistic simulation reference data. The simulation of binary DPPC/cholesterol mixtures covering the relevant biological content of CHOL in mammalian membranes is shown to correctly predict the main lipid behavior as observed experimentally.

Keywords: Cholesterol; Coarse-grained; DPPC; Diffusion; Lipid bilayers; Molecular dynamics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Membrane / chemistry
  • Cholesterol / chemistry*
  • Diffusion
  • Lipid Bilayers / chemistry
  • Molecular Dynamics Simulation*
  • Molecular Structure
  • Static Electricity
  • Thermodynamics

Substances

  • Lipid Bilayers
  • Cholesterol