Streptomyces desertarenae sp. nov., a novel actinobacterium isolated from a desert sample

Antonie Van Leeuwenhoek. 2019 Mar;112(3):367-374. doi: 10.1007/s10482-018-1163-0. Epub 2018 Sep 17.

Abstract

A Streptomyces isolate, designated strain SYSU D8023T, was isolated from a desert sand sample collected from Gurbantunggut desert, China. The characterisation of the isolate was achieved using a polyphasic taxonomic approach. The isolate was found to be Gram-positive and aerobic. The strain was found to be able to grow at 14-50 °C, pH 6.0-9.0 and in the presence of up to 7% (w/v) NaCl. Strain SYSU D8023T contains LL-diaminopimelic acid as a cell wall diamino acid. The polar lipids were identified as diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, an unidentified glycolipid and an unidentified phospholipid. MK-9(H6) and MK-9(H8) were detected as the respiratory quinones, and anteiso-C15:0, iso-C16:0 and anteiso-C17:0 as the predominant fatty acids. Pairwise comparison of the 16S rRNA gene sequences indicated that strain SYSU D8023T has a sequence identity of 97.9% to Streptomyces barkulensis RC 1831T. The DNA G + C content of strain SYSU D8023T was determined to be 70.1 mol%. Based on the analyses of the phenotypic, genotypic and phylogenetic characteristics, strain SYSU D8023T was concluded to represent a novel species of the genus Streptomyces, for which the name Streptomyces desertarenae sp. nov. is proposed. The type strain of the species is SYSU D8023T (= CGMCC 4.7455T = KCTC 49023T).

Keywords: Gurbantunggut desert; Polyphasic taxonomy; Streptomyces desertarenae sp. nov..

MeSH terms

  • Aerobiosis
  • Base Composition
  • Cell Wall / chemistry
  • China
  • Cytosol / chemistry
  • Desert Climate
  • Diaminopimelic Acid / analysis
  • Fatty Acids / analysis
  • Glycolipids / analysis
  • Hydrogen-Ion Concentration
  • Phospholipids / analysis
  • Phylogeny
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Sequence Homology, Nucleic Acid
  • Sodium Chloride / metabolism
  • Soil Microbiology*
  • Streptomyces / classification*
  • Streptomyces / genetics
  • Streptomyces / isolation & purification*
  • Streptomyces / physiology
  • Temperature

Substances

  • Fatty Acids
  • Glycolipids
  • Phospholipids
  • Quinones
  • RNA, Ribosomal, 16S
  • Sodium Chloride
  • Diaminopimelic Acid