The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation

Nat Commun. 2018 Sep 14;9(1):3759. doi: 10.1038/s41467-018-06247-5.

Abstract

Recognition of histones by epigenetic readers is a fundamental mechanism for the regulation of chromatin and transcription. Most reader modules target specific post-translational modifications on histones. Here, we report the identification of a reader of histone H3, the ZZ-type zinc finger (ZZ) domain of ZZZ3, a subunit of the Ada-two-A-containing (ATAC) histone acetyltransferase complex. The solution NMR structure of the ZZ in complex with the H3 peptide reveals a unique binding mechanism involving caging of the N-terminal Alanine 1 of histone H3 in an acidic cavity of the ZZ domain, indicating a specific recognition of H3 versus other histones. Depletion of ZZZ3 or disruption of the ZZ-H3 interaction dampens ATAC-dependent promoter histone H3K9 acetylation and target gene expression. Overall, our study identifies the ZZ domain of ZZZ3 as a histone H3 reader that is required for the ATAC complex-mediated maintenance of histone acetylation and gene activation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylation
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Epigenesis, Genetic
  • HEK293 Cells
  • Histone Acetyltransferases / genetics*
  • Histone Acetyltransferases / metabolism
  • Histone Code / genetics*
  • Histones / metabolism*
  • Humans
  • Magnetic Resonance Spectroscopy
  • Protein Processing, Post-Translational
  • Spectrometry, Fluorescence
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*
  • Transcriptional Activation / genetics*
  • Zinc Fingers

Substances

  • DNA-Binding Proteins
  • Histones
  • Transcription Factors
  • ZZZ3 protein, human
  • Histone Acetyltransferases