A comprehensive manually-curated compendium of bovine transcription factors

Sci Rep. 2018 Sep 13;8(1):13747. doi: 10.1038/s41598-018-32146-2.

Abstract

Transcription factors (TFs) are pivotal regulatory proteins that control gene expression in a context-dependent and tissue-specific manner. In contrast to human, where comprehensive curated TF collections exist, bovine TFs are only rudimentary recorded and characterized. In this article, we present a manually-curated compendium of 865 sequence-specific DNA-binding bovines TFs, which we analyzed for domain family distribution, evolutionary conservation, and tissue-specific expression. In addition, we provide a list of putative transcription cofactors derived from known interactions with the identified TFs. Since there is a general lack of knowledge concerning the regulation of gene expression in cattle, the curated list of TF should provide a basis for an improved comprehension of regulatory mechanisms that are specific to the species.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cattle
  • DNA-Binding Proteins / genetics*
  • Databases, Genetic*
  • Gene Expression Regulation / genetics*
  • Humans
  • Transcription Factors / genetics*

Substances

  • DNA-Binding Proteins
  • Transcription Factors