GNPTAB c.2404C > T nonsense mutation in a patient with mucolipidosis III alpha/beta: a case report

BMC Med Genet. 2018 Sep 12;19(1):162. doi: 10.1186/s12881-018-0679-5.

Abstract

Background: Mucolipidosis alpha/beta is an inborn error of metabolism characterized by deficiency of GlcNAc-1-phosphotransferase, in which essential alpha/beta subunits are encoded by the GNPTAB gene. The autosomal recessive condition is due to disruptions of hydrolase mannose 6-phosphate marker generation, defective lysosomal targeting and subsequent intracellular accumulation of non-degraded material. Clinical severity depends on residual GlcNAc-1-phosphotransferase activity, which distinguishes between the milder type III disease and the severe, neonatal onset type II disease.

Case presentation: We report the clinical, biochemical and genetic diagnosis of mucolipidosis III alpha/beta in a two-year-old Chinese boy who initially presented with poor weight gain, microcephaly and increased tone. He was confirmed to harbor the common splice site mutation c.2715 + 1G > A and the nonsense variant c.2404C > T (p.Q802*). Clinically, the patient had multiple phenotypic features typical of mucopolysaccharidosis including joint contractures, coarse facial features, kypho-lordosis, pectus carinatum and umbilical hernia. However, the relatively mild developmental delay compared to severe type I and type II mucopolysaccharidosis and the absence of macrocephaly raised the possibility of the less commonly diagnosed mucolipidosis alpha/beta. Critical roles of lysosomal enzyme activity assay, which showed elevated α-iduronidase, iduronate sulfatase, galactose-6-sulphate sulphatase, arylsulfatase B and α-hexosaminidase activities; and genetic study, which confirmed the parental origin of both mutations, were highlighted.

Conclusions: The recently reported nonsense variant c.2404C > T in the GNPTAB gene is further recognized and this contributes to the genotype-phenotype spectrum of mucolipidosis alpha/beta.

Keywords: GNPTAB; GlcNAc-1-phosphotransferase; Mucolipidosis III alpha/beta; Nonsense variant; P.Q802*; Pseudo-hurler polydystrophy.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Child, Preschool
  • Chondroitinsulfatases / genetics
  • Chondroitinsulfatases / metabolism
  • Codon, Nonsense*
  • Gene Expression Regulation
  • Genes, Recessive
  • Humans
  • Iduronate Sulfatase / genetics
  • Iduronate Sulfatase / metabolism
  • Iduronidase / genetics
  • Iduronidase / metabolism
  • Lysosomes / enzymology
  • Lysosomes / pathology
  • Male
  • Mucolipidoses / diagnosis
  • Mucolipidoses / enzymology
  • Mucolipidoses / genetics*
  • Mucolipidoses / pathology
  • N-Acetylgalactosamine-4-Sulfatase / genetics
  • N-Acetylgalactosamine-4-Sulfatase / metabolism
  • Pedigree
  • Transferases (Other Substituted Phosphate Groups) / deficiency
  • Transferases (Other Substituted Phosphate Groups) / genetics*
  • beta-Hexosaminidase alpha Chain / genetics
  • beta-Hexosaminidase alpha Chain / metabolism

Substances

  • Codon, Nonsense
  • Transferases (Other Substituted Phosphate Groups)
  • GNPTAB protein, human
  • Chondroitinsulfatases
  • N-Acetylgalactosamine-4-Sulfatase
  • ARSB protein, human
  • Iduronate Sulfatase
  • GALNS protein, human
  • HEXA protein, human
  • beta-Hexosaminidase alpha Chain
  • Iduronidase

Supplementary concepts

  • Mucolipidosis III Alpha Beta, Atypical