Humans and animals can flexibly switch rules to generate the appropriate response to the same sensory stimulus, e.g., we kick a soccer ball toward a friend on our team, but we kick the ball away from a friend who is traded to an opposing team. Most motor learning experiments have relied on a fixed rule; therefore, the effects of switching rules on motor learning are unclear. Here, we study the availability of motor learning effects when a rule in the training phase is different from a rule in the probe phase. Our results suggest that switching a rule causes partial rather than perfect availability. To understand the neural mechanisms inherent in our results, we verify that a computational model can explain our experimental results when each neural unit has different activities, but the total population activity is the same in the same planned movement with different rules. Thus, we conclude that switching rules causes modulations in individual neural activities under the same population activity, resulting in a partial transfer of learning effects for the same planned movements. Our results indicate that sports training and rehabilitation should include various situations even when the same motions are required.